docs: update architecture diagrams

docs/architecture/module.mmd

@@ -4,7 +4,7 @@ graph TD
     Adapters[Adapters]
     Application[Application]
     Adapters -->|24 deps| Domain
+    Presentation -->|1 dep| Application
     Application -->|2 deps| Domain
     Presentation -->|11 deps| Adapters
-    Presentation -->|1 dep| Application
     Presentation -->|1 dep| Domain

docs/architecture/project.mmd

@@ -16,19 +16,19 @@ graph TD
         archlens_html[archlens-html]
     end
     archlens_application --> archlens_domain
-    archlens --> archlens_html
-    archlens --> archlens_walkdir
-    archlens --> archlens_domain
-    archlens --> archlens_stdout_writer
     archlens --> archlens_cargo_workspace
     archlens --> archlens_application
-    archlens --> archlens_toml_config
+    archlens --> archlens_walkdir
-    archlens --> archlens_d2
-    archlens --> archlens_mermaid
     archlens --> archlens_file_writer
-    archlens --> archlens_tree_sitter
+    archlens --> archlens_html
-    archlens --> archlens_ascii
+    archlens --> archlens_stdout_writer
     archlens --> archlens_python_project
+    archlens --> archlens_d2
+    archlens --> archlens_ascii
+    archlens --> archlens_tree_sitter
+    archlens --> archlens_domain
+    archlens --> archlens_toml_config
+    archlens --> archlens_mermaid
     archlens_tree_sitter --> archlens_domain
     archlens_walkdir --> archlens_domain
     archlens_mermaid --> archlens_domain

docs/architecture/type/adapters.mmd

@@ -60,7 +60,6 @@ classDiagram
     PyprojectToml : tool ToolSection
     WalkdirDiscovery : +new() -] Self
     WalkdirDiscovery : -detect_language(path Path) -] Option[Language]
-    WalkdirDiscovery : -is_test_file(path Path, language Language) -] bool
     WalkdirDiscovery : -is_excluded(path Path, root Path, excludes [String]) -] bool
     TreeSitterAnalyzer : rust RustExtractor
     TreeSitterAnalyzer : python PythonExtractor

docs/architecture/type/domain.mmd

@@ -54,6 +54,7 @@ classDiagram
     ModuleName : +capitalize(s str) -] String
     ModuleName : +as_str() -] str
     Language : +name() -] static str
+    Language : +is_test_file(path Path) -] bool
     FilePath : +new(value str) -] Result[Self, DomainError]
     FilePath : +as_str() -] str
     RuleViolation : source_module String
@@ -88,6 +89,7 @@ classDiagram
     AnalysisConfig : +include_tests() -] bool
     AnalysisConfig : +with_changed_files(files HashSet[String]) -] Self
     AnalysisConfig : +changed_files() -] Option[HashSet[String]]
+    AnalysisConfig : +is_standard_excluded(name str) -] bool
     AnalysisResult : elements Vec
     AnalysisResult : relationships Vec
     AnalysisResult : warnings Vec
@@ -157,6 +159,7 @@ classDiagram
     CodeGraph : +qualify() -] CodeGraph
     CodeGraph : +cross_module_deps_for(module ModuleName) -] Vec[(ModuleName, usize)]
     CodeGraph : +subgraph_by_module(module ModuleName) -] CodeGraph
+    CodeGraph : +merge_project_edges(project_graph CodeGraph)
     CodeGraph : +module_edges() -] HashMap[(String, String), usize]
     SourceFile --> FilePath
     SourceFile --> Language

docs/architecture/type/overview.mmd

@@ -97,7 +97,6 @@ classDiagram
     PyprojectToml : tool ToolSection
     WalkdirDiscovery : +new() -] Self
     WalkdirDiscovery : -detect_language(path Path) -] Option[Language]
-    WalkdirDiscovery : -is_test_file(path Path, language Language) -] bool
     WalkdirDiscovery : -is_excluded(path Path, root Path, excludes [String]) -] bool
     TreeSitterAnalyzer : rust RustExtractor
     TreeSitterAnalyzer : python PythonExtractor
@@ -180,6 +179,7 @@ classDiagram
     ModuleName : +capitalize(s str) -] String
     ModuleName : +as_str() -] str
     Language : +name() -] static str
+    Language : +is_test_file(path Path) -] bool
     FilePath : +new(value str) -] Result[Self, DomainError]
     FilePath : +as_str() -] str
     RuleViolation : source_module String
@@ -214,6 +214,7 @@ classDiagram
     AnalysisConfig : +include_tests() -] bool
     AnalysisConfig : +with_changed_files(files HashSet[String]) -] Self
     AnalysisConfig : +changed_files() -] Option[HashSet[String]]
+    AnalysisConfig : +is_standard_excluded(name str) -] bool
     AnalysisResult : elements Vec
     AnalysisResult : relationships Vec
     AnalysisResult : warnings Vec
@@ -283,6 +284,7 @@ classDiagram
     CodeGraph : +qualify() -] CodeGraph
     CodeGraph : +cross_module_deps_for(module ModuleName) -] Vec[(ModuleName, usize)]
     CodeGraph : +subgraph_by_module(module ModuleName) -] CodeGraph
+    CodeGraph : +merge_project_edges(project_graph CodeGraph)
     CodeGraph : +module_edges() -] HashMap[(String, String), usize]
     Cli : command Option
     Cli : path PathBuf